PlantPromoterDB promoter information of AT1G08930.2
Summary of Gene (AT1G08930.2)
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Overview
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Focused view (chromosome 1: 2883654-2884853)
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Genome position
from initiation codon AT1G08970.2 AT1G08970.3 AT1G08970.4 AT1G08980.1 TSS from cDNA TSS information AT1G08930.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G08930.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | + | 2873482 | -122 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 2873465 | -139 |
| TSS clone | A | clone | + | 2873494 | -110 |
| TSS clone | A | clone | + | 2873547 | -57 |
| TSS clone | A | clone | + | 2873548 | -56 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTTCTT | + | 2873496 | 2873503 | -108 | -101 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATGACGTGT | + | 2873385 | 2873393 | -219 | -211 | |||
| AtREG483 | ATGACGTG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG517 | TGACGTGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 2 | + | 2883736 | AT1G08980.1 |
| TSS peak | G | 8 | + | 2884418 | AT1G08980.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 2884425 | AT1G08980.1 |
| TSS clone | T | clone | + | 2884426 | AT1G08980.1 |
| TSS clone | T | clone | + | 2884435 | AT1G08980.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||