Summary of Gene (AT1G08950.1)
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Overview |
Genome position
TSS from cDNA TSS information AT1G08950.1 5'->3' (-) Promoter sequence AT1G08960.1
AT1G08970.1 AT1G08970.2 AT1G08970.3 AT1G08970.4 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | T | 4 | + | 2882565 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 2882524 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
TSS clone | T | clone | + | 2882526 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
TSS clone | A | clone | + | 2882531 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
TSS clone | A | clone | + | 2882532 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
TSS clone | T | clone | + | 2882544 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCCTCCTC | + | 2882534 | 2882542 | AT1G08970.1, AT1G08970.2, AT1G08970.3, AT1G08970.4 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATAAGCCCAATG | + | 2882463 | 2882474 | AT1G08970.1, AT1G08970.2, AT1G08970.3, AT1G08970.4 | ||||
AtREG462 | ATAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG426 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG461 | GCCCAATG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACGACACC | + | 2882481 | 2882488 | AT1G08970.1, AT1G08970.2, AT1G08970.3, AT1G08970.4 | ||||
AtREG599 | ACGACACC | PPDB Motif |   | PLACE Motif |   |