PlantPromoterDB promoter information of AT1G08950.1
Summary of Gene (AT1G08950.1)
|
Overview
|
Focused view (chromosome 1: 2883453-2882254)
|
Genome position
TSS from cDNA TSS information AT1G08950.1 5'->3' (-) Promoter sequence AT1G08970.1
AT1G08970.2 AT1G08970.3 AT1G08970.4 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT1G08950.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | T | 4 | + | 2882565 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | + | 2882524 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
| TSS clone | T | clone | + | 2882526 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
| TSS clone | A | clone | + | 2882531 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
| TSS clone | A | clone | + | 2882532 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
| TSS clone | T | clone | + | 2882544 | AT1G08970.4, AT1G08970.1, AT1G08970.3, AT1G08970.2 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCCTCCTC | + | 2882534 | 2882542 | AT1G08970.1, AT1G08970.2, AT1G08970.3, AT1G08970.4 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ATAAGCCCAATG | + | 2882463 | 2882474 | AT1G08970.1, AT1G08970.2, AT1G08970.3, AT1G08970.4 | ||||
| AtREG462 | ATAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG426 | TAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG407 | AAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG402 | AGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG461 | GCCCAATG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ACGACACC | + | 2882481 | 2882488 | AT1G08970.1, AT1G08970.2, AT1G08970.3, AT1G08970.4 | ||||
| AtREG599 | ACGACACC | PPDB Motif | PLACE Motif | ||||||