Summary of Gene (AT1G08970.2)
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Overview |
Genome position
from initiation codon AT1G08970.4 AT1G08980.1 TSS from cDNA TSS information AT1G08970.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | T | 4 | + | 2882565 | -579 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 2882524 | -620 |
TSS clone | T | clone | + | 2882526 | -618 |
TSS clone | A | clone | + | 2882531 | -613 |
TSS clone | A | clone | + | 2882532 | -612 |
TSS clone | T | clone | + | 2882544 | -600 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCCTCCTC | + | 2882534 | 2882542 | -610 | -602 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATAAGCCCAATG | + | 2882463 | 2882474 | -681 | -670 | |||
AtREG462 | ATAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG426 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG461 | GCCCAATG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACGACACC | + | 2882481 | 2882488 | -663 | -656 | |||
AtREG599 | ACGACACC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 8 | + | 2884418 | AT1G08980.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 2884425 | AT1G08980.1 |
TSS clone | T | clone | + | 2884426 | AT1G08980.1 |
TSS clone | T | clone | + | 2884435 | AT1G08980.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |