PlantPromoterDB promoter information of AT1G10070
Summary of Gene (AT1G10070)
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Overview
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Focused view (chromosome 1: 3287255-3288454)
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Genome position
from initiation codon AT1G10070.2 AT1G10070.3 TSS from cDNA TSS information AT1G10070 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G10070
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 10 | + | 3288156 | -99 |
| TSS peak | A | 5 | + | 3288637 | 382 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 3288087 | -168 |
| TSS clone | C | clone | + | 3288091 | -164 |
| TSS clone | C | clone | + | 3288095 | -160 |
| TSS clone | C | clone | + | 3288106 | -149 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTTCTT | + | 3288118 | 3288125 | -137 | -130 |
| Y Patch | TTCTCTTCC | + | 3288132 | 3288140 | -123 | -115 |
| Y Patch | TTCTCTCTTC | + | 3288172 | 3288181 | -83 | -74 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGACACGTC | + | 3287917 | 3287925 | -338 | -330 | |||
| AtREG470 | AGACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG481 | GACACGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||