PlantPromoterDB promoter information of AT1G10950.1

Summary of Gene (AT1G10950.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G10950 TAIR NCBI
Gene model	AT1G10950.1
Description	endomembrane protein 70, putative; LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: endomembrane protein 70, putative (TAIR:AT2G01970.1); Has 1032 Blast hits to 991 proteins in 166 species: Archae - 0; Bacteria - 8; Metazoa - 443; Fungi - 164; Plants - 234; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 3658322-3659521)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G10950.1 5'->3' (+) Promoter sequence AT1G10940.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G10950.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 8 + 3659247 -75

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	8	+	3659247	-75

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 3659209 -113

TSS clone T clone + 3659211 -111

TSS clone A clone + 3659217 -105

TSS clone A clone + 3659239 -83

TSS clone T clone + 3659241 -81

TSS clone A clone + 3659243 -79

TSS clone T clone + 3659260 -62

TSS clone T clone + 3659264 -58

TSS clone G clone + 3659266 -56

TSS clone A clone + 3659267 -55

TSS clone G clone + 3659270 -52

TSS clone T clone + 3659274 -48

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	3659209	-113
TSS clone	`T`	clone	+	3659211	-111
TSS clone	`A`	clone	+	3659217	-105
TSS clone	`A`	clone	+	3659239	-83
TSS clone	`T`	clone	+	3659241	-81
TSS clone	`A`	clone	+	3659243	-79
TSS clone	`T`	clone	+	3659260	-62
TSS clone	`T`	clone	+	3659264	-58
TSS clone	`G`	clone	+	3659266	-56
TSS clone	`A`	clone	+	3659267	-55
TSS clone	`G`	clone	+	3659270	-52
TSS clone	`T`	clone	+	3659274	-48

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTCTCTC + 3659257 3659265 -65 -57

Y Patch CCTTCCTC + 3659287 3659294 -35 -28

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTCTCTC`	+	3659257	3659265	-65	-57
Y Patch	`CCTTCCTC`	+	3659287	3659294	-35	-28
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TATATGGGCCG + 3659035 3659045 -287 -277

AtREG620 TATATGGG    PPDB Motif GCCCA PLACE Motif

AtREG432 ATATGGGC   PPDB Motif GCCCA PLACE Motif

AtREG364   TATGGGCC PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG380    ATGGGCCG PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG AAAGGCCCAAT + 3659073 3659083 -249 -239

AtREG359 AAAGGCCC    PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353 AAGGCCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   AGGCCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352    GGCCCAAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG TATATGGG + 3659113 3659120 -209 -202

AtREG620 TATATGGG PPDB Motif GCCCA PLACE Motif

REG CAAGCCCAATTA + 3659152 3659163 -170 -159

AtREG525 CAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407 AAGCCCAA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402   AGCCCAAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG418    GCCCAATT PPDB Motif GCCCA PLACE Motif

AtREG600     CCCAATTA PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TATATGGGCCG`		+	3659035	3659045	-287	-277
	AtREG620	`TATATGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG432	`ATATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG364	`TATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG380	`ATGGGCCG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`AAAGGCCCAAT`		+	3659073	3659083	-249	-239
	AtREG359	`AAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`AGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`TATATGGG`		+	3659113	3659120	-209	-202
	AtREG620	`TATATGGG`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`CAAGCCCAATTA`		+	3659152	3659163	-170	-159
	AtREG525	`CAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG402	`AGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG418	`GCCCAATT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG600	`CCCAATTA`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 2 - 3658563 AT1G10940.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	2	-	3658563	AT1G10940.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 3658578 AT1G10940.1

TSS clone T clone - 3658539 AT1G10940.1

TSS clone T clone - 3658536 AT1G10940.1

TSS clone T clone - 3658409 AT1G10940.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	3658578	AT1G10940.1
TSS clone	`T`	clone	-	3658539	AT1G10940.1
TSS clone	`T`	clone	-	3658536	AT1G10940.1
TSS clone	`T`	clone	-	3658409	AT1G10940.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCTTCTTC - 3658547 3658555 AT1G10940.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCTTCTTC`	-	3658547	3658555	AT1G10940.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GTGGGTCCC - 3658634 3658642 AT1G10940.1

AtREG523 GTGGGTCC PPDB Motif GGGACCC PLACE Motif

AtREG615 TGGGTCCC ABA PPDB Motif GGGACCC PLACE Motif

REG AAGCGCGT - 3658718 3658725 AT1G10940.1

AtREG492 AAGCGCGT PPDB Motif ACGCGC PLACE Motif

REG CGTGTCGT - 3658767 3658774 AT1G10940.1

AtREG428 CGTGTCGT ABA, DREB1Aox, Ethylene, Drought PPDB Motif PLACE Motif