PlantPromoterDB promoter information of AT1G11860
Summary of Gene (AT1G11860)
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Overview
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Focused view (chromosome 1: 4000801-4002000)
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Genome position
from initiation codon AT1G11860.2 TSS from cDNA TSS information AT1G11860 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G11860
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 21 | + | 4001384 | -417 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 4001280 | -521 |
| TSS clone | T | clone | + | 4001300 | -501 |
| TSS clone | T | clone | + | 4001320 | -481 |
| TSS clone | A | clone | + | 4001353 | -448 |
| TSS clone | A | clone | + | 4001357 | -444 |
| TSS clone | T | clone | + | 4001360 | -441 |
| TSS clone | A | clone | + | 4001366 | -435 |
| TSS clone | T | clone | + | 4001401 | -400 |
| TSS clone | G | clone | + | 4001406 | -395 |
| TSS clone | G | clone | + | 4001410 | -391 |
| TSS clone | A | clone | + | 4001411 | -390 |
| TSS clone | G | clone | + | 4001412 | -389 |
| TSS clone | G | clone | + | 4001420 | -381 |
| TSS clone | G | clone | + | 4001421 | -380 |
| TSS clone | A | clone | + | 4001423 | -378 |
| TSS clone | G | clone | + | 4001433 | -368 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCCTTTT | + | 4001204 | 4001211 | -597 | -590 | |||
| AtREG459 | GGCCTTTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||