PlantPromoterDB promoter information of AT1G11870.1
Summary of Gene (AT1G11870.1)
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Overview
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Focused view (chromosome 1: 4002895-4004094)
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Genome position
from initiation codon AT1G11860.2 AT1G11870.2 AT1G11870.3 TSS from cDNA TSS information AT1G11870.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G11870.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | T | 4 | + | 4002995 | -900 |
| TSS peak | A | 4 | + | 4003122 | -773 |
| TSS peak | G | 5 | + | 4003874 | -21 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 4003877 | -18 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTTCTCCTC | + | 4002999 | 4003010 | -896 | -885 |
| Y Patch | TCTTCTTC | + | 4003866 | 4003873 | -29 | -22 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TATACCGG | + | 4002700 | 4002707 | -1195 | -1188 | |||
| AtREG629 | TATACCGG | PPDB Motif | PLACE Motif | ||||||
| REG | GAAACGACA | + | 4002854 | 4002862 | -1041 | -1033 | |||
| AtREG576 | GAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
| REG | TGGGCTCACATGGGCCATA | + | 4002891 | 4002909 | -1004 | -986 | |||
| AtREG485 | TGGGCTCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG504 | CATGGGCC | PPDB Motif | GCCCA, CCATGG | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG490 | ATGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG437 | TGGGCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG479 | GGGCCATA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | TGTCGTTTT | + | 4003720 | 4003728 | -175 | -167 | |||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG520 | GTCGTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | AACACGTGGCAA | + | 4003764 | 4003775 | -131 | -120 | |||
| AtREG590 | AACACGTG | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG367 | CACGTGGC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG452 | CGTGGCAA | PPDB Motif | PLACE Motif | GCCAC | |||||
| REG | AAACGACA | + | 4003797 | 4003804 | -98 | -91 | |||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||