Summary of Gene (AT1G12010)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G12010 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 18 | + | 4056207 | -67 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 4056207 | -67 |
TSS clone | A | clone | + | 4056208 | -66 |
TSS clone | A | clone | + | 4056214 | -60 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CGCCTATAAATA | + | 4056170 | 4056181 | -104 | -93 |
Y Patch | CCCTCTCTC | + | 4056190 | 4056198 | -84 | -76 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCAATTA | + | 4055980 | 4055987 | -294 | -287 | |||
AtREG600 | CCCAATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCAATTA | + | 4056079 | 4056086 | -195 | -188 | |||
AtREG600 | CCCAATTA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |