PlantPromoterDB promoter information of AT1G12640.1

Summary of Gene (AT1G12640.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G12640 TAIR NCBI
Gene model	AT1G12640.1
Description	membrane bound O-acyl transferase (MBOAT) family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); BEST Arabidopsis thaliana protein match is: membrane bound O-acyl transferase (MBOAT) family protein (TAIR:AT1G63050.1); Has 864 Blast hits to 862 proteins in 168 species: Archae - 0; Bacteria - 109; Metazoa - 536; Fungi - 94; Plants - 27; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 4306666-4305467)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G12640.1 5'->3' (-) Promoter sequence AT1G12650.1 AT1G12650.2 AT1G12650.3 AT1G12650.4 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G12640.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 21 - 4305723 -57

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	21	-	4305723	-57

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 4305791 -125

TSS clone A clone - 4305790 -124

TSS clone T clone - 4305754 -88

TSS clone A clone - 4305717 -51

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	4305791	-125
TSS clone	`A`	clone	-	4305790	-124
TSS clone	`T`	clone	-	4305754	-88
TSS clone	`A`	clone	-	4305717	-51

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ACGACACGACACG - 4305764 4305776 -98 -110

AtREG428 ACGACACGACACG ABA, DREB1Aox, Ethylene, Drought PPDB Motif PLACE Motif

REG ACGACACGACACC - 4305786 4305798 -120 -132

AtREG428 ACGACACG      ABA, DREB1Aox, Ethylene, Drought PPDB Motif PLACE Motif

AtREG599      ACGACACC PPDB Motif PLACE Motif

REG GACCGGTTTAT - 4305839 4305849 -173 -183

AtREG552 GACCGGTT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG436 ACCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG412   CCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG598    CGGTTTAT PPDB Motif AACCG(G/A) PLACE Motif

REG TTAAACCGT - 4305888 4305896 -222 -230

AtREG473 TTAAACCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG652 TAAACCGT PPDB Motif PLACE Motif

REG AGGGTATTT - 4305900 4305908 -234 -242

AtREG567 AGGGTATT PPDB Motif ACCCT PLACE Motif

AtREG602 GGGTATTT PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ACGACACGACACG`		-	4305764	4305776	-98	-110
	AtREG428	`ACGACACGACACG`	ABA, DREB1Aox, Ethylene, Drought	PPDB Motif		PLACE Motif
REG	`ACGACACGACACC`		-	4305786	4305798	-120	-132
	AtREG428	`ACGACACG`	ABA, DREB1Aox, Ethylene, Drought	PPDB Motif		PLACE Motif
	AtREG599	`ACGACACC`		PPDB Motif		PLACE Motif
REG	`GACCGGTTTAT`		-	4305839	4305849	-173	-183
	AtREG552	`GACCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG436	`ACCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`CCGGTTTA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG598	`CGGTTTAT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TTAAACCGT`		-	4305888	4305896	-222	-230
	AtREG473	`TTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG652	`TAAACCGT`		PPDB Motif		PLACE Motif
REG	`AGGGTATTT`		-	4305900	4305908	-234	-242
	AtREG567	`AGGGTATT`		PPDB Motif	`ACCCT`	PLACE Motif
	AtREG602	`GGGTATTT`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 8 + 4305933 AT1G12650.1, AT1G12650.2, AT1G12650.3, AT1G12650.4

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	8	+	4305933	AT1G12650.1, AT1G12650.2, AT1G12650.3, AT1G12650.4

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone + 4306059 AT1G12650.1, AT1G12650.2, AT1G12650.3, AT1G12650.4

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	4306059	AT1G12650.1, AT1G12650.2, AT1G12650.3, AT1G12650.4

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CGTGTCGTGTCGT + 4305764 4305776 AT1G12650.1, AT1G12650.2, AT1G12650.3, AT1G12650.4

AtREG428 CGTGTCGTGTCGT ABA, DREB1Aox, Ethylene, Drought PPDB Motif PLACE Motif

REG GGTGTCGTGTCGT + 4305786 4305798 AT1G12650.1, AT1G12650.2, AT1G12650.3, AT1G12650.4

AtREG599 GGTGTCGT      PPDB Motif PLACE Motif

AtREG428      CGTGTCGT ABA, DREB1Aox, Ethylene, Drought PPDB Motif PLACE Motif

REG ATAAACCGGTC + 4305839 4305849 AT1G12650.1, AT1G12650.2, AT1G12650.3, AT1G12650.4

AtREG598 ATAAACCG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG436   AAACCGGT PPDB Motif AACCG(G/A) PLACE Motif

AtREG552    AACCGGTC PPDB Motif AACCG(G/A) PLACE Motif