Summary of Gene (AT1G12780)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G12780 5'->3' (-) Promoter sequence AT1G12810.1
AT1G12810.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 49 | - | 4358224 | -104 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 4358326 | -206 |
TSS clone | A | clone | - | 4358255 | -135 |
TSS clone | A | clone | - | 4358233 | -113 |
TSS clone | C | clone | - | 4358226 | -106 |
TSS clone | C | clone | - | 4358225 | -105 |
TSS clone | A | clone | - | 4358224 | -104 |
TSS clone | T | clone | - | 4358223 | -103 |
TSS clone | A | clone | - | 4358220 | -100 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTTC | - | 4358212 | 4358219 | -92 | -99 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AGCCCACT | - | 4358324 | 4358331 | -204 | -211 | |||
AtREG510 | AGCCCACT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |