PlantPromoterDB promoter information of AT1G12780
Summary of Gene (AT1G12780)
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Overview
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Focused view (chromosome 1: 4371770-4370571)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G12780 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G12780
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 49 | - | 4358224 | -104 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 4358326 | -206 |
| TSS clone | A | clone | - | 4358255 | -135 |
| TSS clone | A | clone | - | 4358233 | -113 |
| TSS clone | C | clone | - | 4358226 | -106 |
| TSS clone | C | clone | - | 4358225 | -105 |
| TSS clone | A | clone | - | 4358224 | -104 |
| TSS clone | T | clone | - | 4358223 | -103 |
| TSS clone | A | clone | - | 4358220 | -100 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTTC | - | 4358212 | 4358219 | -92 | -99 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGCCCACT | - | 4358324 | 4358331 | -204 | -211 | |||
| AtREG510 | AGCCCACT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 8 | - | 4371264 | AT1G12820.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 4371293 | AT1G12820.1 |
| TSS clone | G | clone | - | 4371269 | AT1G12820.1 |
| TSS clone | C | clone | - | 4371263 | AT1G12820.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTCTTCTCTTCTCTCTCTC | - | 4371235 | 4371258 | AT1G12820.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CCGTTGGAT | - | 4371383 | 4371391 | AT1G12820.1 | ||||
| AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| AtREG586 | CGTTGGAT | PPDB Motif | CCAACGG | PLACE Motif | |||||
| REG | CAACGGTC | - | 4371430 | 4371437 | AT1G12820.1 | ||||
| AtREG553 | CAACGGTC | Auxin | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | |||