Summary of Gene (AT1G13990)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G13990 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 13 | + | 4794691 | -119 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 4794714 | -96 |
TSS clone | A | clone | + | 4794757 | -53 |
TSS clone | A | clone | + | 4794764 | -46 |
TSS clone | A | clone | + | 4794772 | -38 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTTCTT | + | 4794682 | 4794690 | -128 | -120 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TAATTACG | + | 4794550 | 4794557 | -260 | -253 | |||
AtREG646 | TAATTACG | ABA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 5 | + | 4797443 | AT1G14000.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 4797409 | AT1G14000.1 |
TSS clone | A | clone | + | 4797411 | AT1G14000.1 |
TSS clone | G | clone | + | 4797444 | AT1G14000.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CATCTCTCTCTCCCTCTCTCC | + | 4797414 | 4797434 | AT1G14000.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AGTCGGTC | + | 4797233 | 4797240 | AT1G14000.1 | ||||
AtREG638 | AGTCGGTC | DREB1Aox, ABA | PPDB Motif | CCGAC  | PLACE Motif | CCGAC, RCCGAC  |