PlantPromoterDB promoter information of AT1G14270.1

Summary of Gene (AT1G14270.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G14270 TAIR NCBI
Gene model	AT1G14270.1
Description	CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 1959 Blast hits to 1957 proteins in 522 species: Archae - 48; Bacteria - 1570; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 4878195-4876996)

`Genome position from initiation codon` `AT1G14270.2 AT1G14270.3 AT1G14270.4 TSS from cDNA TSS information AT1G14270.1 5'->3' (-) Promoter sequence AT1G14280.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G14270.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone C clone - 4877248 -53

TSS clone T clone - 4877244 -49

TSS clone peak A clone - 4877208 -13

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`C`	clone	-	4877248	-53
TSS clone	`T`	clone	-	4877244	-49
TSS clone peak	`A`	clone	-	4877208	-13

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTTCCTC - 4877218 4877226 -23 -31

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTTCCTC`	-	4877218	4877226	-23	-31
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TAAATGGGCCTTAA - 4877289 4877302 -94 -107

AtREG443 TAAATGGG       PPDB Motif GCCCA PLACE Motif

AtREG386 AAATGGGC      PPDB Motif GCCCA PLACE Motif

AtREG361   AATGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    ATGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353     TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG351      GGGCCTTA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG416       GGCCTTAA PPDB Motif PLACE Motif

REG TTAATGGGCTTTGGGCCTATA - 4877309 4877329 -114 -134

AtREG396 TTAATGGG              PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG357 TAATGGGC             PPDB Motif GCCCA PLACE Motif

AtREG372   AATGGGCT            PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    ATGGGCTT           PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376     TGGGCTTT          PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG559      GGGCTTTG         PPDB Motif GCCCA PLACE Motif

AtREG373          TTTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356           TTGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358            TGGGCCTA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG362             GGGCCTAT PPDB Motif GCCCA PLACE Motif GGGCC

AtREG487              GGCCTATA PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TAAATGGGCCTTAA`		-	4877289	4877302	-94	-107
	AtREG443	`TAAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG386	`AAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG361	`AATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`ATGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG351	`GGGCCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG416	`GGCCTTAA`		PPDB Motif		PLACE Motif
REG	`TTAATGGGCTTTGGGCCTATA`		-	4877309	4877329	-114	-134
	AtREG396	`TTAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif	`TTAATGG`
	AtREG357	`TAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG372	`AATGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`ATGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG559	`GGGCTTTG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG373	`TTTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG358	`TGGGCCTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG362	`GGGCCTAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG487	`GGCCTATA`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 13 + 4877634 AT1G14280.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	13	+	4877634	AT1G14280.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 4877194 AT1G14270.2, AT1G14270.3, AT1G14270.4

TSS clone T clone - 4877190 AT1G14270.2, AT1G14270.3, AT1G14270.4

TSS clone A clone - 4877178 AT1G14270.2, AT1G14270.3, AT1G14270.4

TSS clone C clone + 4877512 AT1G14280.1

TSS clone A clone + 4877637 AT1G14280.1

TSS clone A clone + 4877638 AT1G14280.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	4877194	AT1G14270.2, AT1G14270.3, AT1G14270.4
TSS clone	`T`	clone	-	4877190	AT1G14270.2, AT1G14270.3, AT1G14270.4
TSS clone	`A`	clone	-	4877178	AT1G14270.2, AT1G14270.3, AT1G14270.4
TSS clone	`C`	clone	+	4877512	AT1G14280.1
TSS clone	`A`	clone	+	4877637	AT1G14280.1
TSS clone	`A`	clone	+	4877638	AT1G14280.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTTCTTCT + 4877589 4877596 AT1G14280.1

Y Patch TCTTCTTC + 4877675 4877682 AT1G14280.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTTCTTCT`	+	4877589	4877596	AT1G14280.1
Y Patch	`TCTTCTTC`	+	4877675	4877682	AT1G14280.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None