PlantPromoterDB promoter information of AT1G14900
Summary of Gene (AT1G14900)
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Overview
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Focused view (chromosome 1: 5140353-5139154)
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Genome position
from initiation codon AT1G14910.1 TSS from cDNA TSS information AT1G14900 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G14900
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 4 | - | 5139419 | -66 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 5139418 | -65 |
| TSS clone | C | clone | - | 5139406 | -53 |
| TSS clone | C | clone | - | 5139405 | -52 |
| TSS clone | A | clone | - | 5139381 | -28 |
| TSS clone | T | clone | - | 5139380 | -27 |
| TSS clone | C | clone | - | 5139377 | -24 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCCTTC | - | 5139382 | 5139389 | -29 | -36 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACCGTCAGA | - | 5139471 | 5139479 | -118 | -126 | |||
| AtREG625 | ACCGTCAG | PPDB Motif | PLACE Motif | ||||||
| AtREG622 | CCGTCAGA | PPDB Motif | PLACE Motif | ||||||
| REG | CCGTTGGAT | - | 5139504 | 5139512 | -151 | -159 | |||
| AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| AtREG586 | CGTTGGAT | PPDB Motif | CCAACGG | PLACE Motif | |||||
| REG | GTCCACGTCAG | - | 5139548 | 5139558 | -195 | -205 | |||
| AtREG513 | GTCCACGT | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG419 | CCACGTCA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG440 | CACGTCAG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | TAAGGGTA | - | 5139585 | 5139592 | -232 | -239 | |||
| AtREG570 | TAAGGGTA | PPDB Motif | ACCCT | PLACE Motif | |||||
| REG | TGTCGTTTT | - | 5139673 | 5139681 | -320 | -328 | |||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG520 | GTCGTTTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||