PlantPromoterDB promoter information of AT1G15030.1
Summary of Gene (AT1G15030.1)
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Overview
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Focused view (chromosome 1: 5176895-5178094)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G15030.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G15030.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | T | clone | + | 5177520 | -375 |
| TSS clone peak | T | clone | + | 5177549 | -346 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCCTCTCTCTCTCTCTCTTCTTTCTCT | + | 5177532 | 5177558 | -363 | -337 |
| Y Patch | TTCTCTTC | + | 5177582 | 5177589 | -313 | -306 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCCAATTG | + | 5177327 | 5177334 | -568 | -561 | |||
| AtREG647 | CCCAATTG | PPDB Motif | PLACE Motif | ||||||
| REG | CCAATAAG | + | 5177358 | 5177365 | -537 | -530 | |||
| AtREG611 | CCAATAAG | PPDB Motif | PLACE Motif | ||||||
| REG | GGGTCAAA | + | 5177455 | 5177462 | -440 | -433 | |||
| AtREG592 | GGGTCAAA | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||