PlantPromoterDB promoter information of AT1G15820
Summary of Gene (AT1G15820)
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Overview
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Focused view (chromosome 1: 5448676-5447477)
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Genome position
from initiation codon AT1G15825.1 TSS from cDNA TSS information AT1G15820 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G15820
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | C | 125 | - | 5447763 | -87 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 5447791 | -115 |
| TSS clone | C | clone | - | 5447788 | -112 |
| TSS clone | T | clone | - | 5447782 | -106 |
| TSS clone | A | clone | - | 5447776 | -100 |
| TSS clone | T | clone | - | 5447772 | -96 |
| TSS clone | T | clone | - | 5447765 | -89 |
| TSS clone | C | clone | - | 5447764 | -88 |
| TSS clone | C | clone | - | 5447763 | -87 |
| TSS clone | G | clone | - | 5447762 | -86 |
| TSS clone | A | clone | - | 5447761 | -85 |
| TSS clone | A | clone | - | 5447760 | -84 |
| TSS clone | A | clone | - | 5447759 | -83 |
| TSS clone | A | clone | - | 5447757 | -81 |
| TSS clone | A | clone | - | 5447755 | -79 |
| TSS clone | A | clone | - | 5447753 | -77 |
| TSS clone | A | clone | - | 5447751 | -75 |
| TSS clone | A | clone | - | 5447749 | -73 |
| TSS clone | A | clone | - | 5447747 | -71 |
| TSS clone | A | clone | - | 5447745 | -69 |
| TSS clone | A | clone | - | 5447742 | -66 |
| TSS clone | A | clone | - | 5447741 | -65 |
| TSS clone | C | clone | - | 5447740 | -64 |
| TSS clone | A | clone | - | 5447735 | -59 |
| TSS clone | A | clone | - | 5447734 | -58 |
| TSS clone | C | clone | - | 5447730 | -54 |
| TSS clone | G | clone | - | 5447692 | -16 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTCTCTTT | - | 5447778 | 5447789 | -102 | -113 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTCCACGTGTCAT | - | 5447995 | 5448007 | -319 | -331 | |||
| AtREG627 | TTCCACGT | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG408 | TCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| AtREG382 | CCACGTGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG438 | CGTGTCAT | ABA | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||