PlantPromoterDB promoter information of AT1G16030.1

Summary of Gene (AT1G16030.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G16030 TAIR NCBI
Gene model	AT1G16030.1
Description	heat shock protein 70B (Hsp70b); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: cytosol, cell wall, plasma membrane, chloroplast, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: HSP70 (heat shock protein 70); ATP binding (TAIR:AT3G12580.1); Has 24709 Blast hits to 24439 proteins in 3097 species: Archae - 107; Bacteria - 9686; Metazoa - 3084; Fungi - 1225; Plants - 724; Viruses - 242; Other Eukaryotes - 9641 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 5505326-5504127)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G16030.1 5'->3' (-) Promoter sequence AT1G16040.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G16030.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 13 - 5504533 -207

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	13	-	5504533	-207

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 5504535 -209

TSS clone C clone - 5504532 -206

TSS clone T clone - 5504407 -81

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	5504535	-209
TSS clone	`C`	clone	-	5504532	-206
TSS clone	`T`	clone	-	5504407	-81

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ATATGGGCTTTAATAGGCCCATTTA - 5504595 5504619 -269 -293

AtREG432 ATATGGGC                  PPDB Motif GCCCA PLACE Motif

AtREG477 TATGGGCT                 PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   ATGGGCTT                PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT               PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG365     GGGCTTTA              PPDB Motif GCCCA PLACE Motif

AtREG545      GGCTTTAA             PPDB Motif PLACE Motif

AtREG424            AATAGGCC       PPDB Motif PLACE Motif

AtREG362             ATAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358              TAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354               AGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361                GGCCCATT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG386                 GCCCATTT PPDB Motif GCCCA PLACE Motif

AtREG443                  CCCATTTA PPDB Motif GCCCA PLACE Motif

REG ACGGGCCTAC - 5504631 5504640 -305 -314

AtREG429 ACGGGCCT   PPDB Motif ACGGGC PLACE Motif GGGCC

AtREG435   GGGCCTAC PPDB Motif GCCCA PLACE Motif GGGCC

REG ACTGGGCCTTTT - 5504650 5504661 -324 -335

AtREG384 ACTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG410 CTGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353   TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG359    GGGCCTTT PPDB Motif GCCCA PLACE Motif GGGCC

AtREG459     GGCCTTTT PPDB Motif PLACE Motif

REG AAAAGCCC - 5504811 5504818 -485 -492

AtREG409 AAAAGCCC PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ATATGGGCTTTAATAGGCCCATTTA`		-	5504595	5504619	-269	-293
	AtREG432	`ATATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG477	`TATGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`ATGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG365	`GGGCTTTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG545	`GGCTTTAA`		PPDB Motif		PLACE Motif
	AtREG424	`AATAGGCC`		PPDB Motif		PLACE Motif
	AtREG362	`ATAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG358	`TAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG386	`GCCCATTT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG443	`CCCATTTA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`ACGGGCCTAC`		-	5504631	5504640	-305	-314
	AtREG429	`ACGGGCCT`		PPDB Motif	`ACGGGC`	PLACE Motif	`GGGCC`
	AtREG435	`GGGCCTAC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
REG	`ACTGGGCCTTTT`		-	5504650	5504661	-324	-335
	AtREG384	`ACTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG410	`CTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG359	`GGGCCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG459	`GGCCTTTT`		PPDB Motif		PLACE Motif
REG	`AAAAGCCC`		-	5504811	5504818	-485	-492
	AtREG409	`AAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 4 + 5504682 AT1G16040.1

TSS peak G 4 + 5504726 AT1G16040.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	4	+	5504682	AT1G16040.1
TSS peak	`G`	4	+	5504726	AT1G16040.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 5504735 AT1G16040.1

TSS clone A clone + 5504736 AT1G16040.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	5504735	AT1G16040.1
TSS clone	`A`	clone	+	5504736	AT1G16040.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box TATATAGA + 5504640 5504647 AT1G16040.1

Y Patch CGTCTTCTTTCTTC + 5504695 5504708 AT1G16040.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TATATAGA`	+	5504640	5504647	AT1G16040.1
Y Patch	`CGTCTTCTTTCTTC`	+	5504695	5504708	AT1G16040.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CGTGGCAC + 5504484 5504491 AT1G16040.1

AtREG444 CGTGGCAC PPDB Motif PLACE Motif GCCAC

REG TAAATGGGCCTATTAAAGCCCATAT + 5504595 5504619 AT1G16040.1

AtREG443 TAAATGGG                  PPDB Motif GCCCA PLACE Motif

AtREG386 AAATGGGC                 PPDB Motif GCCCA PLACE Motif

AtREG361   AATGGGCC                PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    ATGGGCCT               PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358     TGGGCCTA              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG362      GGGCCTAT             PPDB Motif GCCCA PLACE Motif GGGCC

AtREG424       GGCCTATT            PPDB Motif PLACE Motif

AtREG545             TTAAAGCC      PPDB Motif PLACE Motif

AtREG365              TAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376               AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378                AAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG477                 AGCCCATA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG432                  GCCCATAT PPDB Motif GCCCA PLACE Motif

REG GTAGGCCCGT + 5504631 5504640 AT1G16040.1

AtREG435 GTAGGCCC   PPDB Motif GCCCA PLACE Motif GGGCC

AtREG429   AGGCCCGT PPDB Motif ACGGGC PLACE Motif GGGCC

REG AAAAGGCCCAGT + 5504650 5504661 AT1G16040.1

AtREG459 AAAAGGCC     PPDB Motif PLACE Motif

AtREG359 AAAGGCCC    PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG410    AGGCCCAG PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG384     GGCCCAGT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY