PlantPromoterDB promoter information of AT1G16070
Summary of Gene (AT1G16070)
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Overview
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Focused view (chromosome 1: 5514779-5513580)
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Genome position
from initiation codon AT1G16070.2 TSS from cDNA TSS information AT1G16070 5'->3' (-) Promoter sequence AT1G16080.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G16070
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 5513895 | -116 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTTATAAAAA | - | 5513920 | 5513930 | -141 | -151 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GACCGTTG | - | 5514086 | 5514093 | -307 | -314 | |||
| AtREG553 | GACCGTTG | Auxin | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | |||
| REG | AAAACGACA | - | 5514126 | 5514134 | -347 | -355 | |||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | + | 5514317 | AT1G16080.1 |
| TSS clone | T | clone | + | 5514318 | AT1G16080.1 |
| TSS clone peak | A | clone | + | 5514369 | AT1G16080.1 |
| TSS clone | T | clone | + | 5514370 | AT1G16080.1 |
| TSS clone | T | clone | + | 5514383 | AT1G16080.1 |
| TSS clone | A | clone | + | 5514385 | AT1G16080.1 |
| TSS clone | T | clone | + | 5514386 | AT1G16080.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CAACGGTC | + | 5514086 | 5514093 | AT1G16080.1 | ||||
| AtREG553 | CAACGGTC | Auxin | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | |||
| REG | TGTCGTTTT | + | 5514126 | 5514134 | AT1G16080.1 | ||||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG520 | GTCGTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | TGCCGTTTT | + | 5514226 | 5514234 | AT1G16080.1 | ||||
| AtREG500 | TGCCGTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG531 | GCCGTTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | TGCCGTTTT | + | 5514253 | 5514261 | AT1G16080.1 | ||||
| AtREG500 | TGCCGTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG531 | GCCGTTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||