PlantPromoterDB promoter information of AT1G16740.1

Summary of Gene (AT1G16740.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G16740 TAIR NCBI
Gene model	AT1G16740.1
Description	ribosomal protein L20 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L20, bacterial-type (InterPro:IPR005812), Ribosomal protein L20 (InterPro:IPR005813); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATCG00660.1); Has 5711 Blast hits to 5711 proteins in 1648 species: Archae - 0; Bacteria - 2947; Metazoa - 105; Fungi - 0; Plants - 471; Viruses - 0; Other Eukaryotes - 2188 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 5726773-5727972)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G16740.1 5'->3' (+) Promoter sequence AT1G16730.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G16740.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 2 + 5727706 -67

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	2	+	5727706	-67

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GTGACACGTGGT + 5727487 5727498 -286 -275

AtREG498 GTGACACG     ABA PPDB Motif PLACE Motif

AtREG389 TGACACGT    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG366   GACACGTG   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG382    ACACGTGG ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG544     CACGTGGT ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG AACACGTGTCC + 5727510 5727520 -263 -253

AtREG590 AACACGTG    ABA, JA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG366   CACGTGTC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG472    ACGTGTCC ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG TAGTGGGCTTTG + 5727545 5727556 -228 -217

AtREG532 TAGTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG510 AGTGGGCT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG518   GTGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG559     GGGCTTTG PPDB Motif GCCCA PLACE Motif

REG TAAAGGCCCAGTA + 5727579 5727591 -194 -182

AtREG467 TAAAGGCC      PPDB Motif PLACE Motif

AtREG359 AAAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG410    AGGCCCAG   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG384     GGCCCAGT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG434      GCCCAGTA PPDB Motif GCCCA PLACE Motif

REG CGACCCGACCCGATCGACCCGG + 5727635 5727656 -138 -117

AtREG383 CGACCCGACCCGA          PPDB Motif PLACE Motif

AtREG390 GACCCGAC              PPDB Motif CCGAC, GGGACCC PLACE Motif CCGAC

AtREG405   ACCCGACC             PPDB Motif CCGAC PLACE Motif CCGAC

AtREG442    CCCGACCC            PPDB Motif CCGAC PLACE Motif CCGAC

AtREG375     CCGACCCG           PPDB Motif CCGAC PLACE Motif CCGAC

AtREG539              TCGACCCG PPDB Motif PLACE Motif

AtREG494               CGACCCGG PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GTGACACGTGGT`		+	5727487	5727498	-286	-275
	AtREG498	`GTGACACG`	ABA	PPDB Motif		PLACE Motif
	AtREG389	`TGACACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
	AtREG366	`GACACGTG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC`
	AtREG382	`ACACGTGG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG544	`CACGTGGT`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
REG	`AACACGTGTCC`		+	5727510	5727520	-263	-253
	AtREG590	`AACACGTG`	ABA, JA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG366	`CACGTGTC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC`
	AtREG472	`ACGTGTCC`	ABA, DREB1Aox, Drought	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
REG	`TAGTGGGCTTTG`		+	5727545	5727556	-228	-217
	AtREG532	`TAGTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG510	`AGTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG518	`GTGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG559	`GGGCTTTG`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TAAAGGCCCAGTA`		+	5727579	5727591	-194	-182
	AtREG467	`TAAAGGCC`		PPDB Motif		PLACE Motif
	AtREG359	`AAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG410	`AGGCCCAG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG384	`GGCCCAGT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG434	`GCCCAGTA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`CGACCCGACCCGATCGACCCGG`		+	5727635	5727656	-138	-117
	AtREG383	`CGACCCGACCCGA`		PPDB Motif		PLACE Motif
	AtREG390	`GACCCGAC`		PPDB Motif	`CCGAC, GGGACCC`	PLACE Motif	`CCGAC`
	AtREG405	`ACCCGACC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG442	`CCCGACCC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG375	`CCGACCCG`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG539	`TCGACCCG`		PPDB Motif		PLACE Motif
	AtREG494	`CGACCCGG`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None