PlantPromoterDB promoter information of AT1G17190
Summary of Gene (AT1G17190)
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Overview
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Focused view (chromosome 1: 5874452-5875651)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G17190 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G17190
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | + | 5875384 | -68 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 5875373 | -79 |
| TSS clone | T | clone | + | 5875375 | -77 |
| TSS clone | T | clone | + | 5875381 | -71 |
| TSS clone | C | clone | + | 5875385 | -67 |
| TSS clone | A | clone | + | 5875392 | -60 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTCTATAAATC | + | 5875340 | 5875350 | -112 | -102 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCCAATAA | + | 5875138 | 5875145 | -314 | -307 | |||
| AtREG417 | CCCAATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGCCTAAA | + | 5875262 | 5875269 | -190 | -183 | |||
| AtREG430 | GGCCTAAA | PPDB Motif | PLACE Motif | ||||||
| REG | CGACGTGG | + | 5875330 | 5875337 | -122 | -115 | |||
| AtREG465 | CGACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||