PlantPromoterDB promoter information of AT1G18710
Summary of Gene (AT1G18710)
|
Overview
|
Focused view (chromosome 1: 6449781-6450980)
|
Genome position
from initiation codon TSS from cDNA TSS information AT1G18710 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT1G18710
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 6450594 | -187 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GGGCTATATAA | + | 6450557 | 6450567 | -224 | -214 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGTCGTTTA | + | 6450323 | 6450331 | -458 | -450 | |||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG565 | GTCGTTTA | PPDB Motif | PLACE Motif | ||||||
| REG | GGGTATTT | + | 6450434 | 6450441 | -347 | -340 | |||
| AtREG602 | GGGTATTT | PPDB Motif | PLACE Motif | ||||||
| REG | ATCCAACGG | + | 6450519 | 6450527 | -262 | -254 | |||
| AtREG586 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||