PlantPromoterDB promoter information of AT1G18730
Summary of Gene (AT1G18730)
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Overview
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Focused view (chromosome 1: 6459625-6460824)
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Genome position
from initiation codon AT1G18730.2 AT1G18730.3 AT1G18730.4 TSS from cDNA TSS information AT1G18730 5'->3' (+) Promoter sequence AT1G18720.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G18730
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 6460566 | -59 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 10 | - | 6459715 | AT1G18720.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | C | clone | - | 6459787 | AT1G18720.1 |
| TSS clone | T | clone | - | 6459752 | AT1G18720.1 |
| TSS clone | T | clone | - | 6459748 | AT1G18720.1 |
| TSS clone | T | clone | - | 6459721 | AT1G18720.1 |
| TSS clone | T | clone | - | 6459718 | AT1G18720.1 |
| TSS clone | A | clone | - | 6459715 | AT1G18720.1 |
| TSS clone | T | clone | - | 6459692 | AT1G18720.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GTGTATAT | - | 6459748 | 6459755 | AT1G18720.1 | |
| Y Patch | CTCTTCCTC | - | 6459675 | 6459683 | AT1G18720.1 | |
| Y Patch | TCTTCTCCTC | - | 6459694 | 6459703 | AT1G18720.1 | |
| Y Patch | TCTCCTCT | - | 6459734 | 6459741 | AT1G18720.1 | |
| Y Patch | TCTTCTTCC | - | 6459757 | 6459765 | AT1G18720.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||