Summary of Gene (AT1G19480.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G19480.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | + | 6744413 | -107 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 6744411 | -109 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTCCCTCTCTCCT | + | 6744386 | 6744399 | -134 | -121 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTTTGGGCTTTA | + | 6744130 | 6744141 | -390 | -379 | |||
AtREG529 | TTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG469 | TTTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG365 | GGGCTTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGCTGGGCTTTTT | + | 6744199 | 6744211 | -321 | -309 | |||
AtREG454 | GGCTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG409 | GGGCTTTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG589 | GGCTTTTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | GTTTGGGCTTTAA | + | 6744273 | 6744285 | -247 | -235 | |||
AtREG474 | GTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG469 | TTTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG365 | GGGCTTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG545 | GGCTTTAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | TAAAAGCCCATATA | + | 6744294 | 6744307 | -226 | -213 | |||
AtREG549 | TAAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG409 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG477 | AGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG432 | GCCCATAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG620 | CCCATATA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |