PlantPromoterDB promoter information of AT1G19660.1
Summary of Gene (AT1G19660.1)
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Overview
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Focused view (chromosome 1: 6803240-6802041)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G19660.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G19660.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 4 | - | 6802619 | -379 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 6802653 | -413 |
| TSS clone | T | clone | - | 6802652 | -412 |
| TSS clone | T | clone | - | 6802644 | -404 |
| TSS clone | C | clone | - | 6802642 | -402 |
| TSS clone | T | clone | - | 6802635 | -395 |
| TSS clone | G | clone | - | 6802605 | -365 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTTCCT | - | 6802609 | 6802616 | -369 | -376 |
| Y Patch | TTCCTCTCTCTCT | - | 6802644 | 6802656 | -404 | -416 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAGGGTAT | - | 6802715 | 6802722 | -475 | -482 | |||
| AtREG623 | AAGGGTAT | PPDB Motif | ACCCT | PLACE Motif | |||||
| REG | CACGTCATC | - | 6802793 | 6802801 | -553 | -561 | |||
| AtREG483 | CACGTCAT | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG578 | ACGTCATC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | GTACACGTGGCGT | - | 6802869 | 6802881 | -629 | -641 | |||
| AtREG562 | GTACACGT | ABA, Auxin | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG367 | CACGTGGC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG371 | ACGTGGCG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG508 | CGTGGCGT | PPDB Motif | PLACE Motif | GCCAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||