PlantPromoterDB promoter information of AT1G20010
Summary of Gene (AT1G20010)
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Overview
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Focused view (chromosome 1: 6941481-6940282)
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Genome position
from initiation codon AT1G20015.1 TSS from cDNA TSS information AT1G20010 5'->3' (-) Promoter sequence AT1G20015
AT1G20015.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G20010
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 42 | - | 6940586 | -105 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 6940697 | -216 |
| TSS clone | A | clone | - | 6940584 | -103 |
| TSS clone | A | clone | - | 6940582 | -101 |
| TSS clone | G | clone | - | 6940578 | -97 |
| TSS clone | T | clone | - | 6940555 | -74 |
| TSS clone | C | clone | - | 6940548 | -67 |
| TSS clone | A | clone | - | 6940530 | -49 |
| TSS clone | C | clone | - | 6940529 | -48 |
| TSS clone | T | clone | - | 6940505 | -24 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGGGGTG | - | 6940630 | 6940637 | -149 | -156 | |||
| AtREG618 | GTGGGGTG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||