PlantPromoterDB promoter information of AT1G20350.1
Summary of Gene (AT1G20350.1)
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Overview
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Focused view (chromosome 1: 7042737-7043936)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G20350.1 5'->3' (+) Promoter sequence AT1G20340.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G20350.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTCCACGT | + | 7043506 | 7043513 | -231 | -224 | |||
| AtREG513 | GTCCACGT | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | ATGACGTGGCGTTTT | + | 7043538 | 7043552 | -199 | -185 | |||
| AtREG483 | ATGACGTG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG419 | TGACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG388 | GACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG371 | ACGTGGCG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG508 | CGTGGCGT | PPDB Motif | PLACE Motif | GCCAC | |||||
| AtREG650 | GGCGTTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | AAATGGGCCTTAATGGGCTTTG | + | 7043585 | 7043606 | -152 | -131 | |||
| AtREG386 | AAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG361 | AATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | ATGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG353 | TGGGCCTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG351 | GGGCCTTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG416 | GGCCTTAA | PPDB Motif | PLACE Motif | ||||||
| AtREG604 | CTTAATGG | PPDB Motif | PLACE Motif | TTAATGG | |||||
| AtREG396 | TTAATGGG | PPDB Motif | GCCCA | PLACE Motif | TTAATGG | ||||
| AtREG357 | TAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG372 | AATGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | ATGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG376 | TGGGCTTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG559 | GGGCTTTG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 1435 | - | 7043326 | AT1G20340.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | C | clone | - | 7043396 | AT1G20340.1 |
| TSS clone | C | clone | - | 7043392 | AT1G20340.1 |
| TSS clone | T | clone | - | 7043387 | AT1G20340.1 |
| TSS clone | T | clone | - | 7043382 | AT1G20340.1 |
| TSS clone | C | clone | - | 7043373 | AT1G20340.1 |
| TSS clone | T | clone | - | 7043372 | AT1G20340.1 |
| TSS clone | T | clone | - | 7043370 | AT1G20340.1 |
| TSS clone | A | clone | - | 7043364 | AT1G20340.1 |
| TSS clone | C | clone | - | 7043363 | AT1G20340.1 |
| TSS clone | T | clone | - | 7043358 | AT1G20340.1 |
| TSS clone | T | clone | - | 7043348 | AT1G20340.1 |
| TSS clone | C | clone | - | 7043334 | AT1G20340.1 |
| TSS clone | C | clone | - | 7043328 | AT1G20340.1 |
| TSS clone | A | clone | - | 7043326 | AT1G20340.1 |
| TSS clone | A | clone | - | 7043325 | AT1G20340.1 |
| TSS clone | A | clone | - | 7043324 | AT1G20340.1 |
| TSS clone | C | clone | - | 7043323 | AT1G20340.1 |
| TSS clone | A | clone | - | 7043321 | AT1G20340.1 |
| TSS clone | A | clone | - | 7043320 | AT1G20340.1 |
| TSS clone | C | clone | - | 7043316 | AT1G20340.1 |
| TSS clone | A | clone | - | 7043313 | AT1G20340.1 |
| TSS clone | A | clone | - | 7043283 | AT1G20340.1 |
| TSS clone | T | clone | - | 7043281 | AT1G20340.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTCTCTTTC | - | 7043365 | 7043376 | AT1G20340.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ACGTGGAC | - | 7043506 | 7043513 | AT1G20340.1 | ||||
| AtREG513 | ACGTGGAC | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | AAAACGCCACGTCAT | - | 7043538 | 7043552 | AT1G20340.1 | ||||
| AtREG650 | AAAACGCC | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG508 | ACGCCACG | PPDB Motif | PLACE Motif | GCCAC | |||||
| AtREG371 | CGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG388 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG419 | CCACGTCA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG483 | CACGTCAT | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| REG | CAAAGCCCATTAAGGCCCATTT | - | 7043585 | 7043606 | AT1G20340.1 | ||||
| AtREG559 | CAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG376 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | AAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG372 | AGCCCATT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG357 | GCCCATTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG396 | CCCATTAA | PPDB Motif | GCCCA | PLACE Motif | TTAATGG | ||||
| AtREG604 | CCATTAAG | PPDB Motif | PLACE Motif | TTAATGG | |||||
| AtREG416 | TTAAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG351 | TAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG353 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG361 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG386 | GCCCATTT | PPDB Motif | GCCCA | PLACE Motif | |||||