PlantPromoterDB promoter information of AT1G20620
Summary of Gene (AT1G20620)
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Overview
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Focused view (chromosome 1: 7142142-7143341)
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Genome position
from initiation codon AT1G20620.2 AT1G20620.5 TSS from cDNA TSS information AT1G20620 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G20620
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 38 | + | 7143118 | -24 |
| TSS peak | G | 5 | + | 7143996 | 854 |
| TSS peak | T | 4 | + | 7144207 | 1065 |
| TSS peak | A | 20 | + | 7144477 | 1335 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 7143067 | -75 |
| TSS clone | C | clone | + | 7143075 | -67 |
| TSS clone | C | clone | + | 7143082 | -60 |
| TSS clone | T | clone | + | 7143083 | -59 |
| TSS clone | C | clone | + | 7143084 | -58 |
| TSS clone | A | clone | + | 7143085 | -57 |
| TSS clone | C | clone | + | 7143086 | -56 |
| TSS clone | T | clone | + | 7143087 | -55 |
| TSS clone | A | clone | + | 7143088 | -54 |
| TSS clone | A | clone | + | 7143089 | -53 |
| TSS clone | C | clone | + | 7143091 | -51 |
| TSS clone | A | clone | + | 7143093 | -49 |
| TSS clone | G | clone | + | 7143115 | -27 |
| TSS clone | T | clone | + | 7144254 | 1112 |
| TSS clone | G | clone | + | 7144493 | 1351 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTTCCT | + | 7144160 | 7144167 | 1018 | 1025 |
| Y Patch | TTCTTCTT | + | 7144465 | 7144472 | 1323 | 1330 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATGGCCCATTT | + | 7142952 | 7142962 | -190 | -180 | |||
| AtREG437 | ATGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG490 | TGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG361 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG386 | GCCCATTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TAGGGCTTTTT | + | 7144078 | 7144088 | 936 | 946 | |||
| AtREG651 | TAGGGCTT | PPDB Motif | PLACE Motif | ||||||
| AtREG409 | GGGCTTTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG589 | GGCTTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | AAGCGCGT | + | 7144218 | 7144225 | 1076 | 1083 | |||
| AtREG492 | AAGCGCGT | PPDB Motif | ACGCGC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||