PlantPromoterDB promoter information of AT1G20630
Summary of Gene (AT1G20630)
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Overview
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Focused view (chromosome 1: 7145812-7147011)
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Genome position
from initiation codon AT1G20620.2 AT1G20620.4 AT1G20620.5 AT1G20630.1 TSS from cDNA TSS information AT1G20630 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G20630
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | C | 26 | + | 7146197 | -615 |
| TSS peak | A | 20 | + | 7146730 | -82 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 7145889 | -923 |
| TSS clone | T | clone | + | 7146019 | -793 |
| TSS clone | A | clone | + | 7146230 | -582 |
| TSS clone | T | clone | + | 7146667 | -145 |
| TSS clone | A | clone | + | 7146730 | -82 |
| TSS clone | G | clone | + | 7146735 | -77 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CGCTATAAAAA | + | 7146695 | 7146705 | -117 | -107 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGCCACGTC | + | 7145989 | 7145997 | -823 | -815 | |||
| AtREG450 | AGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG388 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| REG | CGTAATTA | + | 7146587 | 7146594 | -225 | -218 | |||
| AtREG646 | CGTAATTA | ABA | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||