PlantPromoterDB promoter information of AT1G20693
Summary of Gene (AT1G20693)
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Overview
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Focused view (chromosome 1: 7176282-7177481)
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Genome position
from initiation codon AT1G20693.1 AT1G20693.2 AT1G20693.3 TSS from cDNA TSS information AT1G20693 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G20693
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 17 | + | 7176886 | -396 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 7176778 | -504 |
| TSS clone | C | clone | + | 7176786 | -496 |
| TSS clone | T | clone | + | 7176810 | -472 |
| TSS clone | A | clone | + | 7176841 | -441 |
| TSS clone | A | clone | + | 7176856 | -426 |
| TSS clone | C | clone | + | 7176863 | -419 |
| TSS clone | T | clone | + | 7176864 | -418 |
| TSS clone | C | clone | + | 7176887 | -395 |
| TSS clone | T | clone | + | 7176908 | -374 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTTCTCC | + | 7176844 | 7176851 | -438 | -431 |
| Y Patch | CCTTCTCTCTTCTTCTCTT | + | 7176859 | 7176877 | -423 | -405 |
| Y Patch | TTCCTTCTTCTCTCTC | + | 7176919 | 7176934 | -363 | -348 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATAAGGGC | + | 7176593 | 7176600 | -689 | -682 | |||
| AtREG616 | ATAAGGGC | PPDB Motif | PLACE Motif | ||||||
| REG | CAAAGGCC | + | 7176666 | 7176673 | -616 | -609 | |||
| AtREG656 | CAAAGGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||