PlantPromoterDB promoter information of AT1G21500
Summary of Gene (AT1G21500)
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Overview
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Focused view (chromosome 1: 7531954-7530755)
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Genome position
from initiation codon AT1G21510.1 TSS from cDNA TSS information AT1G21500 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G21500
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 115 | - | 7530979 | -25 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 7531024 | -70 |
| TSS clone | T | clone | - | 7531019 | -65 |
| TSS clone | T | clone | - | 7531012 | -58 |
| TSS clone | T | clone | - | 7531008 | -54 |
| TSS clone | T | clone | - | 7531006 | -52 |
| TSS clone | T | clone | - | 7530983 | -29 |
| TSS clone | C | clone | - | 7530978 | -24 |
| TSS clone | G | clone | - | 7530963 | -9 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGCAGCGTTT | - | 7531149 | 7531158 | -195 | -204 | |||
| AtREG369 | CGCAGCGT | PPDB Motif | PLACE Motif | ||||||
| AtREG626 | CAGCGTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | GCGTTTTG | - | 7531192 | 7531199 | -238 | -245 | |||
| AtREG585 | GCGTTTTG | PPDB Motif | AAACG(C/G) | PLACE Motif | CAAAACGC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||