Summary of Gene (AT1G21560.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G21560.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | T | clone | + | 7554841 | -589 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TGAGCCCAATT | + | 7554690 | 7554700 | -740 | -730 | |||
AtREG485 | TGAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG533 | GAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG418 | GCCCAATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AGTTGGGCCTTAT | + | 7554706 | 7554718 | -724 | -712 | |||
AtREG607 | AGTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG449 | GTTGGGCC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG351 | GGGCCTTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG425 | GGCCTTAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TTATGGGCCTGA | + | 7554722 | 7554733 | -708 | -697 | |||
AtREG394 | TTATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG364 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG370 | TGGGCCTG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG374 | GGGCCTGA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |