PlantPromoterDB promoter information of AT1G22450.1
Summary of Gene (AT1G22450.1)
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Overview
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Focused view (chromosome 1: 7924447-7925646)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G22450.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G22450.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 49 | + | 7925352 | -95 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 7925121 | -326 |
| TSS clone | A | clone | + | 7925314 | -133 |
| TSS clone | T | clone | + | 7925377 | -70 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTCTC | + | 7925357 | 7925364 | -90 | -83 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTTATTGGGCCTAAA | + | 7925229 | 7925243 | -218 | -204 | |||
| AtREG611 | CTTATTGG | PPDB Motif | PLACE Motif | ||||||
| AtREG417 | TTATTGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG355 | TATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG352 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | TTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG358 | TGGGCCTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG360 | GGGCCTAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG430 | GGCCTAAA | PPDB Motif | PLACE Motif | ||||||
| REG | ACAGGCCCAAAT | + | 7925258 | 7925269 | -189 | -178 | |||
| AtREG433 | ACAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG370 | CAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | AGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG373 | GGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG421 | GCCCAAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TGTCGTTTT | + | 7925293 | 7925301 | -154 | -146 | |||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG520 | GTCGTTTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||