PlantPromoterDB promoter information of AT1G23480
Summary of Gene (AT1G23480)
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Overview
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Focused view (chromosome 1: 8332917-8334116)
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Genome position
from initiation codon AT1G23480.2 AT1G23480.3 TSS from cDNA TSS information AT1G23480 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G23480
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 8333632 | -285 |
| TSS clone peak | T | clone | + | 8333706 | -211 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATTATATATG | + | 8333666 | 8333675 | -251 | -242 |
| TATA Box | AATATAAACA | + | 8333775 | 8333784 | -142 | -133 |
| TATA Box | ATTATATACA | + | 8334154 | 8334163 | 237 | 246 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACACGTCAT | + | 8333467 | 8333475 | -450 | -442 | |||
| AtREG517 | ACACGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG483 | CACGTCAT | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| REG | AAAGTCAA | + | 8333539 | 8333546 | -378 | -371 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||