PlantPromoterDB promoter information of AT1G24040.1

Summary of Gene (AT1G24040.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G24040 TAIR NCBI
Gene model	AT1G24040.1
Description	GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 68 Blast hits to 68 proteins in 27 species: Archae - 9; Bacteria - 18; Metazoa - 3; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 8507753-8506554)

`Genome position from initiation codon` `AT1G24040.2 TSS from cDNA TSS information AT1G24040.1 5'->3' (-) Promoter sequence AT1G24050.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G24040.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 2 - 8506779 -26

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	2	-	8506779	-26

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 8506804 -51

TSS clone G clone - 8506795 -42

TSS clone G clone - 8506779 -26

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	8506804	-51
TSS clone	`G`	clone	-	8506795	-42
TSS clone	`G`	clone	-	8506779	-26

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box GTTATAAACA - 8506810 8506819 -57 -66

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`GTTATAAACA`	-	8506810	8506819	-57	-66
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TCAAAACGCGGCGTTTTA - 8506859 8506876 -106 -123

AtREG653 TCAAAACG           PPDB Motif AAACG(C/G) PLACE Motif

AtREG585 CAAAACGC          PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

AtREG566   AAAACGCG         PPDB Motif AAACG(C/G) PLACE Motif

AtREG650          GGCGTTTT PPDB Motif AAACG(C/G) PLACE Motif

AtREG564           GCGTTTTA PPDB Motif AAACG(C/G) PLACE Motif

REG TATATGGGCCATAAGGGCCCAATAA - 8506898 8506922 -145 -169

AtREG620 TATATGGG                  PPDB Motif GCCCA PLACE Motif

AtREG432 ATATGGGC                 PPDB Motif GCCCA PLACE Motif

AtREG364   TATGGGCC                PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG490    ATGGGCCA               PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG437     TGGGCCAT              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG479      GGGCCATA             PPDB Motif GCCCA PLACE Motif GGGCC

AtREG616           ATAAGGGC        PPDB Motif PLACE Motif

AtREG400              AGGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG392               GGGCCCAA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352                GGCCCAAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355                 GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG417                  CCCAATAA PPDB Motif GCCCA PLACE Motif

REG ATATGGGCCTTAAGCCCAAAT - 8506962 8506982 -209 -229

AtREG432 ATATGGGC              PPDB Motif GCCCA PLACE Motif

AtREG364 TATGGGCC             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354   ATGGGCCT            PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353    TGGGCCTT           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG351     GGGCCTTA          PPDB Motif GCCCA PLACE Motif GGGCC

AtREG416      GGCCTTAA         PPDB Motif PLACE Motif

AtREG426           TAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407            AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469             AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG421              GCCCAAAT PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TCAAAACGCGGCGTTTTA`		-	8506859	8506876	-106	-123
	AtREG653	`TCAAAACG`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG585	`CAAAACGC`		PPDB Motif	`AAACG(C/G)`	PLACE Motif	`CAAAACGC`
	AtREG566	`AAAACGCG`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG650	`GGCGTTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG564	`GCGTTTTA`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
REG	`TATATGGGCCATAAGGGCCCAATAA`		-	8506898	8506922	-145	-169
	AtREG620	`TATATGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG432	`ATATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG364	`TATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG490	`ATGGGCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG437	`TGGGCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG479	`GGGCCATA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG616	`ATAAGGGC`		PPDB Motif		PLACE Motif
	AtREG400	`AGGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG392	`GGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG355	`GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG417	`CCCAATAA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`ATATGGGCCTTAAGCCCAAAT`		-	8506962	8506982	-209	-229
	AtREG432	`ATATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG364	`TATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`ATGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG351	`GGGCCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG416	`GGCCTTAA`		PPDB Motif		PLACE Motif
	AtREG426	`TAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG469	`AGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG421	`GCCCAAAT`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 20 + 8507020 AT1G24050.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	20	+	8507020	AT1G24050.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone + 8507020 AT1G24050.1

TSS clone A clone + 8507021 AT1G24050.1

TSS clone G clone + 8507027 AT1G24050.1

TSS clone G clone + 8507033 AT1G24050.1

TSS clone G clone + 8507034 AT1G24050.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	8507020	AT1G24050.1
TSS clone	`A`	clone	+	8507021	AT1G24050.1
TSS clone	`G`	clone	+	8507027	AT1G24050.1
TSS clone	`G`	clone	+	8507033	AT1G24050.1
TSS clone	`G`	clone	+	8507034	AT1G24050.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box ATATATATAGT + 8506987 8506997 AT1G24050.1

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`ATATATATAGT`	+	8506987	8506997	AT1G24050.1
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TTAAAGCC + 8506741 8506748 AT1G24050.1

AtREG545 TTAAAGCC PPDB Motif PLACE Motif

REG TAAAACGCCGCGTTTTGA + 8506859 8506876 AT1G24050.1

AtREG564 TAAAACGC           PPDB Motif AAACG(C/G) PLACE Motif

AtREG650 AAAACGCC          PPDB Motif AAACG(C/G) PLACE Motif

AtREG566         CGCGTTTT   PPDB Motif AAACG(C/G) PLACE Motif

AtREG585          GCGTTTTG PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

AtREG653           CGTTTTGA PPDB Motif AAACG(C/G) PLACE Motif

REG TTATTGGGCCCTTATGGCCCATATA + 8506898 8506922 AT1G24050.1

AtREG417 TTATTGGG                  PPDB Motif GCCCA PLACE Motif

AtREG355 TATTGGGC                 PPDB Motif GCCCA PLACE Motif

AtREG352   ATTGGGCC                PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG392    TTGGGCCC               PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG400     TGGGCCCT              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG616        GCCCTTAT           PPDB Motif PLACE Motif

AtREG479             TATGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG437              ATGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG490               TGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364                GGCCCATA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG432                 GCCCATAT PPDB Motif GCCCA PLACE Motif

AtREG620                  CCCATATA PPDB Motif GCCCA PLACE Motif

REG ATTTGGGCTTAAGGCCCA + 8506962 8506979 AT1G24050.1

AtREG421 ATTTGGGC           PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT          PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT         PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG426    TGGGCTTA        PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG416         TTAAGGCC   PPDB Motif PLACE Motif

AtREG351          TAAGGCCC PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353           AAGGCCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY