PlantPromoterDB promoter information of AT1G24800.1
Summary of Gene (AT1G24800.1)
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Overview
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Focused view (chromosome 1: 8762741-8763940)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G24800.1 5'->3' (+) Promoter sequence AT1G24764.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G24800.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 8769680 | -61 |
| TSS clone | C | clone | + | 8769690 | -51 |
| TSS clone | G | clone | + | 8769699 | -42 |
| TSS clone peak | A | clone | + | 8769700 | -41 |
| TSS clone | T | clone | + | 8769720 | -21 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CATTATAA | + | 8769643 | 8769650 | -98 | -91 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTTAACCG | + | 8769393 | 8769400 | -348 | -341 | |||
| AtREG645 | TTTAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 8763355 | AT1G24764.1 |
| TSS clone peak | T | clone | - | 8763346 | AT1G24764.1 |
| TSS clone | A | clone | - | 8763340 | AT1G24764.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTCTCT | - | 8763316 | 8763326 | AT1G24764.1 | |
| Y Patch | TTCTCTTCTCTCTC | - | 8763341 | 8763354 | AT1G24764.1 | |
| Y Patch | TCTCTCTTCTCTT | - | 8763361 | 8763373 | AT1G24764.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||