Summary of Gene (AT1G25280.3)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT1G25280.2 TSS from cDNA TSS information AT1G25280.3 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 8865442 | -234 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AGATGGGCTAA | + | 8865132 | 8865142 | -544 | -534 | |||
AtREG572 | AGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG581 | ATGGGCTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG571 | TGGGCTAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | TTCGGTTT | + | 8865233 | 8865240 | -443 | -436 | |||
AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | GGGCCTGA | + | 8865279 | 8865286 | -397 | -390 | |||
AtREG374 | GGGCCTGA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | GGTTCGGTTT | + | 8865326 | 8865335 | -350 | -341 | |||
AtREG451 | GGTTCGGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |