Summary of Gene (AT1G25550)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G25550 5'->3' (+) Promoter sequence AT1G25540.1
AT1G25540.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 10 | + | 8976538 | -106 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 8976538 | -106 |
TSS clone | T | clone | + | 8976539 | -105 |
TSS clone | T | clone | + | 8976553 | -91 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCTTTCTCT | + | 8976489 | 8976499 | -155 | -145 |
Y Patch | CTTTCTCTCTCAT | + | 8976541 | 8976553 | -103 | -91 |
Y Patch | CTCTTCTCT | + | 8976567 | 8976575 | -77 | -69 |
Y Patch | TCTCTCTC | + | 8976577 | 8976584 | -67 | -60 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCGTCGTT | + | 8976253 | 8976260 | -391 | -384 | |||
AtREG648 | TCGTCGTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTCGGTTT | + | 8976444 | 8976451 | -200 | -193 | |||
AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |