Summary of Gene (AT1G26120.1)
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Overview |
Genome position
from initiation codon AT1G26110.2 TSS from cDNA TSS information AT1G26120.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 9031485 | -83 |
TSS clone peak | A | clone | - | 9031454 | -52 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCCTCCT | - | 9031502 | 9031510 | -100 | -108 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTAAACCGT | - | 9031682 | 9031690 | -280 | -288 | |||
AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG652 | TAAACCGT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 42 | - | 9027742 | AT1G26110.1, AT1G26110.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 9027758 | AT1G26110.1, AT1G26110.2 |
TSS clone | C | clone | - | 9027757 | AT1G26110.1, AT1G26110.2 |
TSS clone | G | clone | - | 9027741 | AT1G26110.1, AT1G26110.2 |
TSS clone | G | clone | - | 9027739 | AT1G26110.1, AT1G26110.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTTCTCTCTCTCTCTCTCTCT | - | 9027693 | 9027714 | AT1G26110.1, AT1G26110.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AATTGGGCTTTTA | - | 9027786 | 9027798 | AT1G26110.1, AT1G26110.2 | ||||
AtREG418 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG402 | ATTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG409 | GGGCTTTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG549 | GGCTTTTA | PPDB Motif |   | PLACE Motif |   |