PlantPromoterDB promoter information of AT1G27310.1
Summary of Gene (AT1G27310.1)
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Overview
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Focused view (chromosome 1: 9486790-9485591)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G27310.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G27310.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 26 | - | 9485896 | -106 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 9485897 | -107 |
| TSS clone | A | clone | - | 9485896 | -106 |
| TSS clone | T | clone | - | 9485895 | -105 |
| TSS clone | T | clone | - | 9485891 | -101 |
| TSS clone | A | clone | - | 9485887 | -97 |
| TSS clone | G | clone | - | 9485879 | -89 |
| TSS clone | A | clone | - | 9485876 | -86 |
| TSS clone | T | clone | - | 9485843 | -53 |
| TSS clone | A | clone | - | 9485838 | -48 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCCTCTCTC | - | 9485849 | 9485857 | -59 | -67 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATAAGGCCCATTTA | - | 9485940 | 9485953 | -150 | -163 | |||
| AtREG425 | ATAAGGCC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG351 | TAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG353 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG361 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG386 | GCCCATTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG443 | CCCATTTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TAACGGGCCCAACT | - | 9485962 | 9485975 | -172 | -185 | |||
| AtREG399 | TAACGGGC | PPDB Motif | ACGGGC | PLACE Motif | YAACKG, CNGTTR | ||||
| AtREG401 | AACGGGCC | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG | PLACE Motif | GGGCC | ||||
| AtREG392 | GGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG449 | GGCCCAAC | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG607 | GCCCAACT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CCCATATA | - | 9485977 | 9485984 | -187 | -194 | |||
| AtREG620 | CCCATATA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||