PlantPromoterDB promoter information of AT1G27390.1

Summary of Gene (AT1G27390.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G27390 TAIR NCBI
Gene model	AT1G27390.1
Description	Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins

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Overview

Focused view (chromosome 1: 9515912-9514713)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G27390.1 5'->3' (-) Promoter sequence AT1G27400.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G27390.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 4 - 9514926 -14

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	4	-	9514926	-14

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 9515001 -89

TSS clone C clone - 9514980 -68

TSS clone A clone - 9514978 -66

TSS clone C clone - 9514925 -13

TSS clone T clone - 9514923 -11

TSS clone G clone - 9514922 -10

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	9515001	-89
TSS clone	`C`	clone	-	9514980	-68
TSS clone	`A`	clone	-	9514978	-66
TSS clone	`C`	clone	-	9514925	-13
TSS clone	`T`	clone	-	9514923	-11
TSS clone	`G`	clone	-	9514922	-10

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAAAAGCCCAATTA - 9515039 9515052 -127 -140

AtREG589 AAAAAGCC       PPDB Motif PLACE Motif

AtREG409 AAAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    AAGCCCAA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402     AGCCCAAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG418      GCCCAATT PPDB Motif GCCCA PLACE Motif

AtREG600       CCCAATTA PPDB Motif GCCCA PLACE Motif

REG ATATGGGCCTTCTGGGCCAC - 9515073 9515092 -161 -180

AtREG432 ATATGGGC             PPDB Motif GCCCA PLACE Motif

AtREG364 TATGGGCC            PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354   ATGGGCCT           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353    TGGGCCTT          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG397           TCTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG458            CTGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG445             TGGGCCAC PPDB Motif GCCCA PLACE Motif GCCAC, GGGCC, TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAAAAGCCCAATTA`		-	9515039	9515052	-127	-140
	AtREG589	`AAAAAGCC`		PPDB Motif		PLACE Motif
	AtREG409	`AAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG402	`AGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG418	`GCCCAATT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG600	`CCCAATTA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`ATATGGGCCTTCTGGGCCAC`		-	9515073	9515092	-161	-180
	AtREG432	`ATATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG364	`TATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`ATGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG397	`TCTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG458	`CTGGGCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG445	`TGGGCCAC`		PPDB Motif	`GCCCA`	PLACE Motif	`GCCAC, GGGCC, TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 2 + 9515211 AT1G27400.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	2	+	9515211	AT1G27400.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 9515139 AT1G27400.1

TSS clone G clone + 9515143 AT1G27400.1

TSS clone A clone + 9515195 AT1G27400.1

TSS clone T clone + 9515196 AT1G27400.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	9515139	AT1G27400.1
TSS clone	`G`	clone	+	9515143	AT1G27400.1
TSS clone	`A`	clone	+	9515195	AT1G27400.1
TSS clone	`T`	clone	+	9515196	AT1G27400.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCCTCTCC + 9515196 9515203 AT1G27400.1

Y Patch TTCTTCTC + 9515212 9515219 AT1G27400.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCCTCTCC`	+	9515196	9515203	AT1G27400.1
Y Patch	`TTCTTCTC`	+	9515212	9515219	AT1G27400.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TCTAGGGTTCGGT + 9514936 9514948 AT1G27400.1

AtREG658 TCTAGGGT      PPDB Motif ACCCT PLACE Motif

AtREG451      GGTTCGGT PPDB Motif PLACE Motif

REG TAATTGGGCTTTTT + 9515039 9515052 AT1G27400.1

AtREG600 TAATTGGG       PPDB Motif GCCCA PLACE Motif

AtREG418 AATTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG402   ATTGGGCT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    TTGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376     TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409      GGGCTTTT PPDB Motif GCCCA PLACE Motif

AtREG589       GGCTTTTT PPDB Motif PLACE Motif

REG GTGGCCCAGAAGGCCCATAT + 9515073 9515092 AT1G27400.1

AtREG445 GTGGCCCA             PPDB Motif GCCCA PLACE Motif GCCAC, GGGCC, TGGGCY

AtREG458 TGGCCCAG            PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG397   GGCCCAGA           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353          AAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354           AGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364            GGCCCATA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG432             GCCCATAT PPDB Motif GCCCA PLACE Motif