Summary of Gene (AT1G29040.3)
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Overview |
Genome position
from initiation codon AT1G29040.2 AT1G29040.4 TSS from cDNA TSS information AT1G29040.3 5'->3' (+) Promoter sequence AT1G29030.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | + | 10134091 | -29 |
TSS peak | A | 4 | + | 10134103 | -17 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 10134089 | -31 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTCTC | + | 10134061 | 10134068 | -59 | -52 |
Y Patch | TCTCTTTC | + | 10134123 | 10134130 | 3 | 10 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TGTCGTTTT | + | 10134011 | 10134019 | -109 | -101 | |||
AtREG569 | TGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG520 | GTCGTTTT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 8 | - | 10133961 | AT1G29030.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 10133961 | AT1G29030.1 |
TSS clone | G | clone | - | 10133960 | AT1G29030.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTTTCTCCTTC | - | 10133971 | 10133983 | AT1G29030.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAACGACA | - | 10134011 | 10134019 | AT1G29030.1 | ||||
AtREG520 | AAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG569 | AAACGACA | PPDB Motif |   | PLACE Motif |   |