PlantPromoterDB promoter information of AT1G29050

Summary of Gene (AT1G29050)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G29050 TAIR NCBI
Gene model	AT1G29050
Description	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34070.1); Has 710 Blast hits to 699 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 709; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 10134232-10133033)

`Genome position from initiation codon` `AT1G29030.1 TSS from cDNA TSS information AT1G29050 5'->3' (-) Promoter sequence AT1G29040.1 AT1G29040.2 AT1G29040.3 AT1G29040.4 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G29050

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 8 - 10139147 -65

TSS peak C 8 - 10139125 -43

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	8	-	10139147	-65
TSS peak	`C`	8	-	10139125	-43

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 10139204 -122

TSS clone A clone - 10139124 -42

TSS clone A clone - 10139085 -3

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	10139204	-122
TSS clone	`A`	clone	-	10139124	-42
TSS clone	`A`	clone	-	10139085	-3

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TGTATAAAAG - 10139151 10139160 -69 -78

TATA Box CATATATACA - 10139173 10139182 -91 -100

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TGTATAAAAG`	-	10139151	10139160	-69	-78
TATA Box	`CATATATACA`	-	10139173	10139182	-91	-100
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CGTGGCAT - 10139331 10139338 -249 -256

AtREG448 CGTGGCAT ABA, DREB1Aox PPDB Motif PLACE Motif GCCAC

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CGTGGCAT`		-	10139331	10139338	-249	-256
	AtREG448	`CGTGGCAT`	ABA, DREB1Aox	PPDB Motif		PLACE Motif	`GCCAC`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 4 + 10134091 AT1G29040.2, AT1G29040.1, AT1G29040.3, AT1G29040.4

TSS peak A 4 + 10134103 AT1G29040.2, AT1G29040.1, AT1G29040.3, AT1G29040.4

TSS peak A 8 - 10133961 AT1G29030.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	4	+	10134091	AT1G29040.2, AT1G29040.1, AT1G29040.3, AT1G29040.4
TSS peak	`A`	4	+	10134103	AT1G29040.2, AT1G29040.1, AT1G29040.3, AT1G29040.4
TSS peak	`A`	8	-	10133961	AT1G29030.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 10134089 AT1G29040.2, AT1G29040.1, AT1G29040.3, AT1G29040.4

TSS clone A clone - 10133961 AT1G29030.1

TSS clone G clone - 10133960 AT1G29030.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	10134089	AT1G29040.2, AT1G29040.1, AT1G29040.3, AT1G29040.4
TSS clone	`A`	clone	-	10133961	AT1G29030.1
TSS clone	`G`	clone	-	10133960	AT1G29030.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTTTCTCCTTC - 10133971 10133983 AT1G29030.1

Y Patch TTTCTCTC + 10134061 10134068 AT1G29040.1, AT1G29040.2, AT1G29040.3, AT1G29040.4

Y Patch TCTCTTTC + 10134123 10134130 AT1G29040.1, AT1G29040.2, AT1G29040.3, AT1G29040.4

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTTTCTCCTTC`	-	10133971	10133983	AT1G29030.1
Y Patch	`TTTCTCTC`	+	10134061	10134068	AT1G29040.1, AT1G29040.2, AT1G29040.3, AT1G29040.4
Y Patch	`TCTCTTTC`	+	10134123	10134130	AT1G29040.1, AT1G29040.2, AT1G29040.3, AT1G29040.4
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AAAACGACA - 10134011 10134019 AT1G29030.1

AtREG520 AAAACGAC PPDB Motif PLACE Motif

AtREG569 AAACGACA PPDB Motif PLACE Motif

REG TGTCGTTTT + 10134011 10134019 AT1G29040.1, AT1G29040.2, AT1G29040.3, AT1G29040.4

AtREG569 TGTCGTTT PPDB Motif PLACE Motif

AtREG520 GTCGTTTT PPDB Motif PLACE Motif