PlantPromoterDB promoter information of AT1G29395
Summary of Gene (AT1G29395)
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Overview
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Focused view (chromosome 1: 10290539-10289340)
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Genome position
from initiation codon AT1G29400.1 AT1G29400.2 TSS from cDNA TSS information AT1G29395 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G29395
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 21 | - | 10289579 | -40 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 10289621 | -82 |
| TSS clone | A | clone | - | 10289595 | -56 |
| TSS clone | A | clone | - | 10289593 | -54 |
| TSS clone | G | clone | - | 10289579 | -40 |
| TSS clone | T | clone | - | 10289578 | -39 |
| TSS clone | A | clone | - | 10289576 | -37 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATATATTC | - | 10289617 | 10289624 | -78 | -85 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTCCACGT | - | 10289632 | 10289639 | -93 | -100 | |||
| AtREG513 | GTCCACGT | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | TCACGTGTA | - | 10289673 | 10289681 | -134 | -142 | |||
| AtREG628 | TCACGTGT | DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG453 | CACGTGTA | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| REG | TCCAACGG | - | 10289732 | 10289739 | -193 | -200 | |||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| REG | GTGGGGTG | - | 10289759 | 10289766 | -220 | -227 | |||
| AtREG618 | GTGGGGTG | PPDB Motif | PLACE Motif | ||||||
| REG | GCTGACGTGG | - | 10289775 | 10289784 | -236 | -245 | |||
| AtREG515 | GCTGACGT | SA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| AtREG440 | CTGACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG419 | TGACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||