PlantPromoterDB promoter information of AT1G30510.1
Summary of Gene (AT1G30510.1)
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Overview
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Focused view (chromosome 1: 10809984-10808785)
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Genome position
from initiation codon AT1G30510.3 AT1G30515.1 TSS from cDNA TSS information AT1G30510.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G30510.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | - | 10809114 | -130 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 10809163 | -179 |
| TSS clone | G | clone | - | 10809150 | -166 |
| TSS clone | A | clone | - | 10809143 | -159 |
| TSS clone | G | clone | - | 10809114 | -130 |
| TSS clone | T | clone | - | 10809049 | -65 |
| TSS clone | T | clone | - | 10809047 | -63 |
| TSS clone | A | clone | - | 10809045 | -61 |
| TSS clone | T | clone | - | 10809041 | -57 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCGGTTCGGTT | - | 10809233 | 10809243 | -249 | -259 | |||
| AtREG575 | TCGGTTCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG456 | CGGTTCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG451 | GGTTCGGT | PPDB Motif | PLACE Motif | ||||||
| AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TGGTTCGGTTTGG | - | 10809259 | 10809271 | -275 | -287 | |||
| AtREG655 | TGGTTCGG | PPDB Motif | PLACE Motif | ||||||
| AtREG451 | GGTTCGGT | PPDB Motif | PLACE Motif | ||||||
| AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG550 | CGGTTTGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GTTCGGTT | - | 10809290 | 10809297 | -306 | -313 | |||
| AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||