PlantPromoterDB promoter information of AT1G31180
Summary of Gene (AT1G31180)
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Overview
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Focused view (chromosome 1: 11145617-11144418)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G31180 5'->3' (-) Promoter sequence AT1G31190.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G31180
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | - | 11144623 | -6 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATAACCGGTC | - | 11144679 | 11144688 | -62 | -71 | |||
| AtREG548 | ATAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG503 | TAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG552 | AACCGGTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GTTCGGTTT | - | 11144814 | 11144822 | -197 | -205 | |||
| AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | + | 11144773 | AT1G31190.1 |
| TSS clone peak | C | clone | + | 11144790 | AT1G31190.1 |
| TSS clone | A | clone | + | 11144833 | AT1G31190.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCAT | + | 11144766 | 11144773 | AT1G31190.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AAAACGCC | + | 11144605 | 11144612 | AT1G31190.1 | ||||
| AtREG650 | AAAACGCC | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | GACCGGTTAT | + | 11144679 | 11144688 | AT1G31190.1 | ||||
| AtREG552 | GACCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG503 | ACCGGTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG548 | CCGGTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||