Summary of Gene (AT1G31180)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G31180 5'->3' (-) Promoter sequence AT1G31190.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | - | 11144623 | -6 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATAACCGGTC | - | 11144679 | 11144688 | -62 | -71 | |||
AtREG548 | ATAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG503 | TAACCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG552 | AACCGGTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | GTTCGGTTT | - | 11144814 | 11144822 | -197 | -205 | |||
AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 11144773 | AT1G31190.1 |
TSS clone peak | C | clone | + | 11144790 | AT1G31190.1 |
TSS clone | A | clone | + | 11144833 | AT1G31190.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTCAT | + | 11144766 | 11144773 | AT1G31190.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAACGCC | + | 11144605 | 11144612 | AT1G31190.1 | ||||
AtREG650 | AAAACGCC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | GACCGGTTAT | + | 11144679 | 11144688 | AT1G31190.1 | ||||
AtREG552 | GACCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG503 | ACCGGTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG548 | CCGGTTAT | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  |