PlantPromoterDB promoter information of AT1G31800.1
Summary of Gene (AT1G31800.1)
|
Overview
|
Focused view (chromosome 1: 11395440-11396639)
|
Genome position
from initiation codon TSS from cDNA TSS information AT1G31800.1 5'->3' (+) Promoter sequence AT1G31790.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT1G31800.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 11396402 | -38 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTTCTTCTTCTTCTTCTT | + | 11396358 | 11396378 | -82 | -62 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTCCGGTTTG | + | 11396105 | 11396114 | -335 | -326 | |||
| AtREG573 | GTCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG496 | CCGGTTTG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GCGCGTGT | + | 11396166 | 11396173 | -274 | -267 | |||
| AtREG385 | GCGCGTGT | PPDB Motif | ACGCGC | PLACE Motif | ACACNNG | ||||
| REG | GGCGCGTGT | + | 11396207 | 11396215 | -233 | -225 | |||
| AtREG486 | GGCGCGTG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG385 | GCGCGTGT | PPDB Motif | ACGCGC | PLACE Motif | ACACNNG | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||