PlantPromoterDB promoter information of AT1G31812.1
Summary of Gene (AT1G31812.1)
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Overview
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Focused view (chromosome 1: 11413099-11411900)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G31812.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G31812.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | - | 11412554 | -455 |
| TSS peak | A | 57 | - | 11412148 | -49 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 11412204 | -105 |
| TSS clone | T | clone | - | 11412197 | -98 |
| TSS clone | G | clone | - | 11412168 | -69 |
| TSS clone | T | clone | - | 11412167 | -68 |
| TSS clone | C | clone | - | 11412154 | -55 |
| TSS clone | G | clone | - | 11412153 | -54 |
| TSS clone | T | clone | - | 11412152 | -53 |
| TSS clone | T | clone | - | 11412150 | -51 |
| TSS clone | C | clone | - | 11412147 | -48 |
| TSS clone | C | clone | - | 11412145 | -46 |
| TSS clone | A | clone | - | 11412142 | -43 |
| TSS clone | T | clone | - | 11412101 | -2 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCATATATATCT | - | 11412177 | 11412188 | -78 | -89 |
| Y Patch | CGTCTTCTCC | - | 11412154 | 11412163 | -55 | -64 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTATGGGCCTGA | - | 11412206 | 11412217 | -107 | -118 | |||
| AtREG394 | TTATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG364 | TATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | ATGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG370 | TGGGCCTG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG374 | GGGCCTGA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | ATCCACGT | - | 11412279 | 11412286 | -180 | -187 | |||
| AtREG547 | ATCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||