Summary of Gene (AT1G32210.1)
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Overview |
Genome position
from initiation codon AT1G32200.2 TSS from cDNA TSS information AT1G32210.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 34 | - | 11607730 | -78 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 11607721 | -69 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TAAACGACGT | - | 11607770 | 11607779 | -118 | -127 | |||
AtREG565 | TAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | AAACGACG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG493 | AACGACGT | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
REG | ATAGGCCC | - | 11607786 | 11607793 | -134 | -141 | |||
AtREG362 | ATAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | TAAAGCCCAAAT | - | 11607804 | 11607815 | -152 | -163 | |||
AtREG365 | TAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG469 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG421 | GCCCAAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAAACGACGCCGTT | - | 11607828 | 11607841 | -176 | -189 | |||
AtREG520 | AAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | AAACGACG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG439 | AACGACGC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG537 | ACGACGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG540 | GACGCCGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG497 | ACGCCGTT | PPDB Motif | AAACG(C/G), CCAACGG  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 17 | - | 11605053 | AT1G32200.1, AT1G32200.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | - | 11605060 | AT1G32200.1, AT1G32200.2 |
TSS clone | A | clone | - | 11605051 | AT1G32200.1, AT1G32200.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |