Summary of Gene (AT1G32220)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G32220 5'->3' (+) Promoter sequence AT1G32240.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 5 | + | 11607912 | -126 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 11607903 | -135 |
TSS clone | A | clone | + | 11607922 | -116 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTTCTCC | + | 11607944 | 11607953 | -94 | -85 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTCGTTTA | + | 11607733 | 11607740 | -305 | -298 | |||
AtREG565 | GTCGTTTA | PPDB Motif |   | PLACE Motif |   | ||||
REG | GATGACGTCGTTTA | + | 11607766 | 11607779 | -272 | -259 | |||
AtREG578 | GATGACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
AtREG431 | GACGTCGT | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
AtREG493 | ACGTCGTT | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
AtREG415 | CGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG565 | GTCGTTTA | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGGCCTAT | + | 11607786 | 11607793 | -252 | -245 | |||
AtREG362 | GGGCCTAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | ATTTGGGCTTTA | + | 11607804 | 11607815 | -234 | -223 | |||
AtREG421 | ATTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG469 | TTTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG365 | GGGCTTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AACGGCGTCGTTTT | + | 11607828 | 11607841 | -210 | -197 | |||
AtREG497 | AACGGCGT | PPDB Motif | AAACG(C/G), CCAACGG  | PLACE Motif |   | ||||
AtREG540 | ACGGCGTC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG537 | GGCGTCGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG439 | GCGTCGTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | CGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG520 | GTCGTTTT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |